PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088845.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 356aa    MW: 41450.6 Da    PI: 4.4547
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088845.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-15107191286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++ v +L+e+  +m  +l+r++l+  +W+evs+k++e  +++r+  qC++ +++l+++ykk+k+++ +    +ss+++yf++++
  XP_010088845.1 107 WTERAVFVLLEVWGNMFVQLGRRSLRFEDWQEVSEKVAEvSKISRTEMQCRNMLDSLKRKYKKEKARMDEL-GLKSSKWAYFKKMD 191
                     *************************************772678**************************96.89999********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-17105191No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDGIEDDDSR YSRKSYPLNF SNPRKLRTRD NIPYAGPIPT RYEEKDDEDE ELDELDEEMD  60
RQDDEEFVDF ERHPKKRKVK NFVPSFEFAP RAKSSYGVRS LGVEKDWTER AVFVLLEVWG  120
NMFVQLGRRS LRFEDWQEVS EKVAEVSKIS RTEMQCRNML DSLKRKYKKE KARMDELGLK  180
SSKWAYFKKM DILMASPARQ NHGLACGVDS GEFVFANTRV YLDRSNRFDE MRDSPVESEN  240
SDEEDDNGND SDGLPPRRVR SGGGGNGESS SSFRVLADSI QKFGEIYGKI ESNKRQQMME  300
LENMRRDFYR ELELQKKQIL ERTQAEIAKI QENDDEDEDG VDDSDDSGDS AEDLSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150445e-45AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088845.10.0hypothetical protein L484_020829
TrEMBLW9R2K40.0W9R2K4_9R
STRINGGLYMA09G32130.21e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-80Trihelix family protein